Adjust brain outline.

This function takes a slice object and first applies a filter with default settings to the image set as the slice registration path. An interative user loop allows for easy adjustment of the brain threshold since the wholebrain GUI tends to be a bit buggy. This function then returns a filter with the adjusted brain threshold.

Usage

adjust_brain_outline(s, filter = NULL)

Arguments

s

slice object

filter

(list, default = NULL) If the user passes their own filter list, it will use that instead of the presaved filter list from SMARTR.

Value

filter (list) wholebrain compatible filter

Examples