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Checks the acronyms and full length region names to match with internally stored ontology

check_ontology_coding.Rd

Run this as a quality check after importing an external dataset using import_mapped_datasets(). This goes through all dataframes for all channels imported and replaces any non-matching acronyms and region names with those as they are exactly coded in SMARTR.

Usage

check_ontology_coding(e, ontology = "allen")

Arguments

e

experiment object

ontology

(str, default = "allen") Region ontology to check against. Options = "allen" or "unified"

Value

e experiment object

Details

Note: Processing times scales with the size of your dataset so it may take a few minutes if your dataset is large...

Examples

e <- check_ontology_coding(e, "allen")
#> Error in check_ontology_coding(e, "allen"): object 'e' not found