Excluded user chosen regions by entering acronyms — exclude_by_acronym • SMARTR

Excluded user chosen regions by entering acronyms

Usage

exclude_by_acronym(
  e,
  acronyms = "fiber_tracts",
  ontology = "allen",
  channels = NULL
)

Arguments

e: experiment object
acronyms: (str, default = "fiber_tracts") vector of region/structure acronyms to exclude from the datasets, e.g. c("CBL", "sox", "3V")
ontology: (str, default = "allen") Region ontology to use. options = "allen" or "unified"
channels: (str, default = NULL) NULL option processes all channels. channels = c("cfos", "eyfp") specifies exact channels.

Value

e experiment object