Export the permutation results as a csv file. This automatically saves into the tables folder.

Export the permutation results as a csv file. This automatically saves into the tables folder.

Usage

export_permutation_results(
  e,
  permutation_groups = "all",
  channels = c("cfos"),
  ontology = "allen",
  filter_significant = TRUE
)

Arguments

e

experiment object

permutation_groups

(str vec, default = "all") Default is to export all analyses run. Supply names of the specific analyses found under e$permutation_p_matrix %>% names() if you want to export specific groups.

channels

(str, channels = c("cfos", "eyfp", "colabel") The channels to process.

ontology

(str, default = "allen") Set to "unified" for Kim Lab unified ontology

filter_significant

(bool, default = TRUE) If FALSE, this keeps all comparisons. Otherwise exports only the most different and significant permutations.