Filters to chosen base parent regions and all child subregions — filter_regions • SMARTR

Filters to chosen base parent regions and all child subregions

Usage

filter_regions(
  e,
  base_regions = c("Isocortex", "OLF", "HPF", "CTXsp", "CNU", "TH", "HY", "MB", "HB",
    "CBL"),
  ontology = "allen",
  channels = NULL
)

Arguments

e: experiment object
base_regions: (default = c("Isocortex", "OLF", "HPF", "CTXsp", "CNU","TH", "HY", "MB", "HB", "CBL")) Region acronyms of base parent regions (and all subregions) to include for analysis
ontology: (str, default = "allen") Options = "allen" or "unified".
channels: (str, default = NULL) NULL option processes all channels. channels = c("cfos", "eyfp") specifies exact channels.

Value

e experiment object