Plot the degree distributions
plot_degree_distributions.RdPlot a stacked bar plot of the degree distributions.
Usage
plot_degree_distributions(
e,
channels = c("cfos", "eyfp"),
color_palettes = c("reds", "greens"),
colors_manual = NULL,
labels = c(female_AD = "female_AD_label", female_control = "female_control_label"),
title = "my_title",
height = 15,
width = 15,
xlim = c(0, 20),
ylim = c(0, 15),
image_ext = ".png",
print_plot = TRUE,
theme.gg = NULL,
save_plot = TRUE
)Arguments
- e
experiment object
- channels
(str, default = c("cfos", "eyfp")) Channels to plot.
- color_palettes
(str, default = c("reds", "greens")) Color palettes from grDevices::hcl.colors that are used to for plotting networks for each channel, respectively.
- colors_manual
(str, default = NULL ) Manually choose the hexadecimal color codes to create a custom color palette, e.g. colors_manual = c("#660000", "#FF0000", "#FF6666"). Warning: this color will be applied to all channels. It's recommended to set the channels parameter to a single channel if this parameter is used.
- labels
(e.g. labels = c(network1_name = "network 1 label", network2_name = "network 2 label)) The legend labels to correspond with your respective network names.
- title
(str, default = "my_title") the experiment object output folder.
- height
(int, default = 15) Height of the plot in inches.
- width
(int, default = 15) Width of the plot in inches.
- xlim
(vec, default = c(0,20)) axes limits x-axis
- ylim
(vec, default = c(0,15))axes limits of y-axis
- image_ext
(default = ".png") image extension to the plot as.
- print_plot
(bool, default = TRUE) Whether to print the plot as an output.
- theme.gg
(default = NULL) Option to use custom ggplot2 theme if the user wants
- save_plot
(bool, default = TRUE) Save into the figures subdirectory of the the experiment object output folder.