Plot the degree distributions across regions — plot_degree

Bar plot of degree per region in descending magnitude

Usage

plot_degree_regions(
  e,
  channels = c("cfos", "eyfp"),
  colors = c("red", "green"),
  network = "AD",
  title = "",
  height = 10,
  width = 20,
  ylim = c(0, 15),
  sort_super_region = FALSE,
  region_label_angle = 60,
  label_text_size = 12,
  image_ext = ".png",
  print_plot = TRUE,
  save_plot = TRUE
)

Arguments

e: experiment object
channels: (str, default = c("cfos", "eyfp", "colabel")) Channels to plot
colors: (str, default = ) String vector of hexadecimal color codes corresponding to to each channel plotted.
network: (str, default = "AD") Which network to plot the degree distribution across regions
title: (str, default = "")
height: (int, default = 15) Height of the plot in inches.
width: (int, default = 20) Width of the plot in inches.
ylim: (vec, default = c(0,15))axes limits of y-axis
sort_super_region: (bool, default = FALSE) Whether to divide into subfacets based on which parent region
region_label_angle: (int, default = 60) Angle of region labels.
label_text_size: (int, default = 12) Font size of region labels. the experiment object output folder.
image_ext: (default = ".png") image extension to the plot as.
print_plot: (bool, default = TRUE) Whether to print the plot as an output.s
save_plot: (bool, default = TRUE) Save into the figures subdirectory of the the experiment object output folder.

Value

p_list A list the same length as the number of channels, with each element containing a plot handle for that channel.