Summarize multiple networks. Create summary dataframes of for multiple networks and calculate network statistics for each network.

Summarize multiple networks. Create summary dataframes of for multiple networks and calculate network statistics for each network.

Usage

summarise_networks(
  e,
  network_names,
  channels = c("cfos", "eyfp", "colabel"),
  save_stats = TRUE,
  save_degree_distribution = TRUE,
  save_betweenness_distribution = TRUE,
  save_efficiency_distribution = TRUE
)

Arguments

e

experiment object

network_names

(str) The names of the networks to generate summary tables for, e.g. network_names = c("female_AD", "female_control")

channels

(str, default = c("cfos", "eyfp", "colabel")) The channels to process.

save_stats

(bool, default = TRUE) Save the summary stats as a csv file in the output folder. Note that the clustering calculated is an average of the local vertex clustering.

save_degree_distribution

(bool, default = TRUE) Save the network degree distributions (frequencies of each degree) across each comparison group as a csv file.

save_betweenness_distribution

(bool, default = TRUE) Save the betweenness distribution and summary as a csv.

save_efficiency_distribution

(bool, default = TRUE) Save the efficiency distribution and summary as a csv.

Value

e experiment object

Examples

e <- get_network_statistics(e,  network_names = c("female_AD", "female_control"),
channels = c("cfos", "eyfp", "colabel"), save_stats = TRUE, save_degree_distribution = TRUE)
#> Error in get_network_statistics(e, network_names = c("female_AD", "female_control"),     channels = c("cfos", "eyfp", "colabel"), save_stats = TRUE,     save_degree_distribution = TRUE): could not find function "get_network_statistics"