Plot the results of the permutation histogram used to determine the p-value of the pairwise region comparison
volcano_plot.Rd
Create a Volcano plot.
Arguments
- e
experiment object
- permutation_comparison
The name of the correlation group comparisons to plot.
- channels
(str, default = c("cfos", "eyfp", "colabel")) channels to plot.
- colors
(str, default = c("#be0000", "#00782e", "#f09b08")) Hexadecimal code for the colors corresponding to the channels attribute of the correlation_list. Color values can also be input compatible with ggplot2 plotting functions.
- save_plot
(bool, default = TRUE) Save into the figures subdirectory of the the experiment object output folder.
- title
Title of the plot.
- height
height of the plot in inches.
- width
width of the plot in inches.
- print_plot
(bool, default = TRUE) Print the plot as graphics windows.
- plt_theme
(default = NULL) Add a
ggplot2::theme()
to the plot. If NULL, the default is taken..- point_size
(default = 1) Size of the plotted points.
- image_ext
(default = ".png") image extension to save the plot as.
Value
p_list A list the same length as the number of channels, with each element containing a plot handle for that channel.
Details
Plot the correlation difference between two comparison groups into a volcano plot. The function
correlation_diff_permutation()
must be run first in order to generate results to plot.