Detect atlas regions that only show up in a single slice object within a mouse.
detect_single_slice_regions.Rd
Quality check function to make sure that the regions included for analysis show up in more than 1 slice object, otherwise the user can remove exceptions from the mouse object.
Regions counts derived from only one image may be less accurate. This function can generate a log of these regions so the user can qualitatively evaluate the raw data. Users also have to option of removing these regions automatically from normalized_counts dataframe.
The user should run normalize_cell_counts()
and get_cell_table()
functions prior to using this function.
If the user has run split_hipp_DV()
with the option to merge, this function will account for for the dorsal and
ventral hippocampal counts separately.